Volume 10; Issue 6 Suppleme

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BMC Bioinformatics
Volume 10; Issue 6 Suppleme

BMC Bioinformatics

Volume 10; Issue 6 Suppleme

1

The 20thanniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community

Domenica D'Elia, Andreas Gisel, Nils-Einar Eriksson, Sophia Kossida, Kimmo Mattila, Lubos Klucar, Erik Bongcam-Rudloff

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 246 KB

english, 2009

2

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data

Ernesto Picardi, Flavio Mignone, Graziano Pesole

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 336 KB

english, 2009

3

GIBA: a clustering tool for detecting protein complexes

Charalampos N Moschopoulos, Georgios A Pavlopoulos, Reinhard Schneider, Spiridon D Likothanassis, Sophia Kossida

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.11 MB

english, 2009

4

'Brukin2D': a 2D visualization and comparison tool for LC-MS data

Dimosthenis Tsagkrasoulis, Panagiotis Zerefos, George Loudos, Antonia Vlahou, Marc Baumann, Sophia Kossida

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 913 KB

english, 2009

5

A chemogenomics view on protein-ligand spaces

Helena Strömbergsson, Gerard J Kleywegt

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.40 MB

english, 2009

6

iBarcode.org: web-based molecular biodiversity analysis

Gregory AC Singer, Mehrdad Hajibabaei

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 761 KB

english, 2009

7

Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria

Monica Santamaria, Saverio Vicario, Graziano Pappadà, Gaetano Scioscia, Claudio Scazzocchio, Cecilia Saccone

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.36 MB

english, 2009

8

Modeling heterocyst pattern formation in cyanobacteria

Ziomara P Gerdtzen, J Cristian Salgado, Axel Osses, Juan A Asenjo, Ivan Rapaport, Barbara A Andrews

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.82 MB

english, 2009

9

Deciphering the connectivity structure of biological networks using MixNet

Franck Picard, Vincent Miele, Jean-Jacques Daudin, Ludovic Cottret, Stéphane Robin

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.97 MB

english, 2009

10

Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX

Álvaro Martínez Barrio, Erik Lagercrantz, Göran O Sperber, Jonas Blomberg, Erik Bongcam-Rudloff

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.87 MB

english, 2009

11

Visualising biological data: a semantic approach to tool and database integration

Steve Pettifer, David Thorne, Philip McDermott, James Marsh, Alice Villéger, Douglas B Kell, Teresa K Attwood

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 813 KB

english, 2009

12

Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements

Teresa M Creanza, David S Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.28 MB

english, 2009

13

Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application

Maria G Roubelakis, Pantelis Zotos, Georgios Papachristoudis, Ioannis Michalopoulos, Kalliopi I Pappa, Nicholas P Anagnou, Sophia Kossida

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 966 KB

english, 2009

14

The GENIUS Grid Portal and robot certificates: a new tool for e-Science

Roberto Barbera, Giacinto Donvito, Alberto Falzone, Giuseppe La Rocca, Luciano Milanesi, Giorgio Pietro Maggi, Saverio Vicario

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 575 KB

english, 2009

15

Massive non-natural proteins structure prediction using grid technologies

Giovanni Minervini, Giuseppe Evangelista, Laura Villanova, Debora Slanzi, Davide De Lucrezia, Irene Poli, Pier Luigi Luisi, Fabio Polticelli

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 777 KB

english, 2009

16

A bioinformatics knowledge discovery in text application for grid computing

Marcello Castellano, Giuseppe Mastronardi, Roberto Bellotti, Gianfranco Tarricone

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 2.91 MB

english, 2009

17

A novel similarity-measure for the analysis of genetic data in complex phenotypes

Vincenzo Lagani, Alberto Montesanto, Fausta Di Cianni, Victor Moreno, Stefano Landi, Domenico Conforti, Giuseppina Rose, Giuseppe Passarino

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 596 KB

english, 2009

18

Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining

Antonio Turi, Corrado Loglisci, Eliana Salvemini, Giorgio Grillo, Donato Malerba, Domenica D'Elia

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 761 KB

english, 2009

19

Databases of homologous gene families for comparative genomics

Simon Penel, Anne-Muriel Arigon, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, Laurent Duret, Manolo Gouy, Guy Perrière

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 2.91 MB

english, 2009

20

RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences

Göran Sperber, Anders Lövgren, Nils-Einar Eriksson, Farid Benachenhou, Jonas Blomberg

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 460 KB

english, 2009

21

RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences

Francesco Rubino, Marcella Attimonelli

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 632 KB

english, 2009

22

DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes

Endre Sebestyén, Tibor Nagy, Sándor Suhai, Endre Barta

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.12 MB

english, 2009

23

TheMycoplasma conjunctivaegenome sequencing, annotation and analysis

Sandra P Calderon-Copete, George Wigger, Christof Wunderlin, Tobias Schmidheini, Joachim Frey, Michael A Quail, Laurent Falquet

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 828 KB

english, 2009

24

Expression pattern divergence of duplicated genes in rice

Zhe Li, He Zhang, Song Ge, Xiaocheng Gu, Ge Gao, Jingchu Luo

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 570 KB

english, 2009

25

Functional assessment of time course microarray data

María José Nueda, Patricia Sebastián, Sonia Tarazona, Francisco García-García, Joaquín Dopazo, Alberto Ferrer, Ana Conesa

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 721 KB

english, 2009

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